OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4799/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           29
Turtle                   26
unknown                   3
OWL/XML Syntax            1
OWL Functional Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 56 5470.783333 20081.116135 0.0 169.50 673.0 2169.75 124680.0
Declaration 56 1027.366667 3221.478737 0.0 77.50 338.0 758.75 22818.0
SubClassOf 54 1310.516667 4367.562418 0.0 21.75 278.5 788.50 24611.0
ObjectPropertyRange 50 33.583333 35.413438 0.0 10.00 24.5 53.00 150.0
ObjectPropertyDomain 49 31.933333 35.821529 0.0 8.00 22.0 46.75 148.0
DataPropertyRange 44 10.583333 17.627301 0.0 0.00 4.5 10.25 97.0
SubObjectPropertyOf 43 40.450000 55.245040 0.0 0.00 22.5 55.50 282.0
InverseObjectProperties 41 11.116667 20.440979 0.0 0.00 2.0 14.75 128.0
DataPropertyDomain 40 10.633333 31.792210 0.0 0.00 2.0 6.25 235.0
ClassAssertion 39 113.566667 364.998508 0.0 0.00 2.0 20.25 1952.0
DisjointClasses 39 222.800000 1583.520448 0.0 0.00 3.0 17.75 12277.0
EquivalentClasses 35 146.966667 793.644115 0.0 0.00 3.0 52.25 6154.0
SubDataPropertyOf 29 5.050000 10.417432 0.0 0.00 0.0 5.50 63.0
SubAnnotationPropertyOf 29 12.166667 32.986986 0.0 0.00 0.0 10.00 228.0
TransitiveObjectProperty 28 3.200000 5.538157 0.0 0.00 0.0 4.25 30.0
FunctionalObjectProperty 26 2.166667 3.585123 0.0 0.00 0.0 3.25 17.0
FunctionalDataProperty 22 1.650000 3.939479 0.0 0.00 0.0 2.00 22.0
AnnotationPropertyRangeOf 21 5.400000 18.208026 0.0 0.00 0.0 2.00 134.0
InverseFunctionalObjectProperty 20 1.300000 2.586143 0.0 0.00 0.0 1.00 12.0
SymmetricObjectProperty 18 2.116667 4.162348 0.0 0.00 0.0 1.25 16.0
ObjectPropertyAssertion 17 235.833333 1342.722433 0.0 0.00 0.0 2.25 10226.0
IrrefexiveObjectProperty 17 2.683333 6.063203 0.0 0.00 0.0 1.00 24.0
AsymmetricObjectProperty 15 2.383333 5.480603 0.0 0.00 0.0 0.25 20.0
DisjointUnion 12 6.166667 18.973815 0.0 0.00 0.0 0.00 116.0
DataPropertyAssertion 12 91.866667 485.217109 0.0 0.00 0.0 0.00 3617.0
SubPropertyChainOf 11 3.283333 15.806126 0.0 0.00 0.0 0.00 120.0
AnnotationPropertyDomain 8 0.233333 0.851055 0.0 0.00 0.0 0.00 6.0
DifferentIndividuals 6 0.350000 1.325436 0.0 0.00 0.0 0.00 7.0
EquivalentObjectProperties 6 1.033333 4.857169 0.0 0.00 0.0 0.00 36.0
DisjointObjectProperties 5 0.300000 1.441515 0.0 0.00 0.0 0.00 10.0
Rule 5 0.700000 3.445951 0.0 0.00 0.0 0.00 25.0
ReflexiveObjectProperty 5 0.083333 0.278718 0.0 0.00 0.0 0.00 1.0
SameIndividual 3 0.516667 2.507559 0.0 0.00 0.0 0.00 17.0
NegativeObjectPropertyAssertion 2 0.033333 0.181020 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 2 0.333333 2.454098 0.0 0.00 0.0 0.00 19.0
EquivalentDataProperties 1 0.083333 0.645497 0.0 0.00 0.0 0.00 5.0
DisjointDataProperties 1 0.033333 0.258199 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 57 4602.300000 13955.418955 0.0 185.25 980.5 2526.50 78659.0
ObjectUnionOf 39 13.283333 21.254783 0.0 0.00 3.5 13.00 88.0
ObjectAllValuesFrom 34 26.350000 59.430297 0.0 0.00 2.5 32.75 400.0
ObjectSomeValuesFrom 33 382.950000 2151.140986 0.0 0.00 4.0 81.00 16630.0
ObjectIntersectionOf 29 133.983333 803.997966 0.0 0.00 0.0 17.00 6224.0
ObjectExactCardinality 26 5.033333 16.187426 0.0 0.00 0.0 3.25 115.0
DataExactCardinality 22 2.400000 4.239444 0.0 0.00 0.0 3.00 18.0
DataHasValue 16 26.616667 75.351626 0.0 0.00 0.0 3.25 494.0
DataAllValuesFrom 16 0.883333 1.851172 0.0 0.00 0.0 1.00 9.0
ObjectComplementOf 15 5.250000 23.609554 0.0 0.00 0.0 0.25 179.0
DataSomeValuesFrom 15 1.133333 2.547625 0.0 0.00 0.0 0.50 14.0
ObjectHasValue 13 8.016667 31.626792 0.0 0.00 0.0 0.00 189.0
ObjectMinCardinality 12 0.916667 2.395559 0.0 0.00 0.0 0.00 11.0
ObjectMaxCardinality 11 15.716667 115.379564 0.0 0.00 0.0 0.00 894.0
ObjectOneOf 10 12.450000 53.601930 0.0 0.00 0.0 0.00 275.0
DataMaxCardinality 6 1.716667 8.409219 0.0 0.00 0.0 0.00 62.0
DataMinCardinality 4 0.283333 1.814178 0.0 0.00 0.0 0.00 14.0
ObjectHasSelf 1 0.016667 0.129099 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.345 0.556 0.133
37 PROVO 0.336 0.504 0.167
30 OBO 0.335 0.571 0.100
17 FOAF 0.333 0.333 0.333
19 IAO 0.300 0.600 0.000
49 enanomapper 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
4 CHAMEO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
36 PMD 0.275 0.549 0.000
26 MaterialsMine 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
41 SEMMD 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
50 m4i 0.241 0.482 0.000
44 SP 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
53 mvc 0.222 0.444 0.000
51 mat 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
55 nfdicore 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
40 SAREF 0.208 0.416 0.000
23 MOL_TENSILE 0.208 0.416 0.000
57 opmw 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
47 WILD 0.200 0.400 0.000
58 periodictable 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
45 SSN 0.189 0.378 0.000
54 mwo 0.189 0.378 0.000
33 OSMO 0.189 0.378 0.000
48 bmo 0.189 0.378 0.000
39 QUDV 0.167 0.333 0.000
52 matinfo 0.167 0.333 0.000
59 ssos 0.155 0.311 0.000
56 ontorule 0.155 0.311 0.000
9 EMMO_BVC 0.000 0.000 0.000
10 EMMO_BattINFO 0.000 0.000 0.000
28 NanoMine 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 60.0 0.227083 0.067770 0.0 0.2 0.234 0.26675 0.345
score_dash 60.0 0.441733 0.124905 0.0 0.4 0.467 0.50975 0.600
score_impact 60.0 0.012217 0.051669 0.0 0.0 0.000 0.00000 0.333

OBO dependency graph